![]() ![]() ![]() But, it's been a painful issue to deal with, since installing rmarkdown fails for me on new projects (it depedns on htmltools) unless I explicitly install knitr first. (I updated the top comment with the list present on this workstation - it's certainly not as clean as I thought.) Perhaps some other library is convincing your code (the part that enhances knitr) or R that knitr is present, and so then the installer runs library(knitr) as seen in the output above when verifying that htmltools loads OK. Troubleshoot slow game or app downloads on Xbox One Account error occurs when signing in to Xbox network. Loaded via a namespace (and not attached):įor reproduction: I spent some time trying to reproduce from the stock R, debian 9, and ubuntu 18.04 docker image without luck - it seems to me that this stems from the set of packages available to R at the time of install. Problem with a game Lets see if we can fix it. stats graphics grDevices datasets utils methods base LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 Remediation (verified by editing local repo, then running devtools::install('/tmp/htmltools'):īLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3 Installation of package ‘htmltools’ had non-zero exit status * removing ‘/home/hblanks/work/lshtm/crisis/git/crisis/build/R-packages/htmltools’ ** testing if installed package can be loadedĮrror in library(knitr) : there is no package called ‘knitr’ Installing to /home/hblanks/work/lshtm/crisis/git/crisis/build/R-packages/htmltools/libs G++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o htmltools.so RcppExports.o init.o template.o -L/usr/lib/R/lib -lR fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c template.cpp -o template.o fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o ** package ‘htmltools’ successfully unpacked and MD5 sums checked * installing *source* package ‘htmltools’. Installing package into ‘/home/hblanks/work/lshtm/crisis/git/crisis/build/R-packages’Ĭontent type 'application/x-gzip' length 45408 bytes (44 KB) ellipsis_0.3.2 ggridges_0.5.3 rstudioapi_0.13 spatstat.data_2.> installed.packages() Loaded via a namespace (and not attached): ![]() stats graphics grDevices utils datasets methods base LAPACK: /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/lib/libRlapack.dylib Platform: aarch64-apple-darwin20 (64-bit) I do appreciate if you advice me what I should do now to run Seurat. Warning: package ‘Seurat’ was built under R version 4.1.2Error: package or namespace load failed for ‘Seurat’ in loadNamespace(j = 1.5.0 is required Unfortunately, Seurat didn't work again as shown below, although it originally worked with R v4.1.1. Then I decided to switch back to uninstall R v4.2.1 and then installed R version 4.1.1 () again. However, this resulted in the situation that Seurat didin't work (I didn't record the detail of the error.) ![]() However, the package "glmGamPoi", so I uninstalled R and Rstudio, and then installed "R-4.2.1.pkg (notarized and signed)". Originally, I used Seurat with "R version 4.1.1 ()". ![]()
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